Publications

Research papers

2024

Herdean, A. |England, H. |Hoch, L. Determination of Photosynthesis-Irradiance-Temperature Relationship Using the Phenoplate Walz Technical Note 2024 

Herdean, A. Advancements in biofeedback photobioreactors: using the language of light deciphered from the organisms themselves Journal & Proceedings of the Royal Society of New South Wales 2024 

Tirado, J. L.| Herdean, A. |Ralph, J. P. The need for smart microalgal bioprospecting. Natural Products and Bioprospecting 2024 

England, H. | Herdean, A. |Matthews, J. | Hughes, D. |  Roper, C. D. |Suggett, D.J. | Voolstra, C. | Camp, E.F. A portable multi-taxa phenotyping device to retrieve physiological performance traits. Scientific Reports 2024 

2023

Miller, S.M.| Herdean, A. | Gupta, V. | Signal B.| Abbriano, R.M.| Ralph, P.J.| Pernice, M. Differential gene expression in a subpopulation of Phaeodactylum tricornutum with enhanced growth and carotenoid production after FACS-mediated selection. Journal of Applied Phycology 2023

Miller, S.M.| Abbriano, R.M.| Herdean, A. | Banati R.| Ralph, P.J.| Pernice, M. Random mutagenesis of Phaeodactylum tricornutum using ultraviolet, chemical, and X-radiation demonstrates the need for temporal analysis of phenotype stability. Scientific Reports 

Matthews, J.L. | Hoch, L. | Campos Diocaretz, B. | Ralph, P.J. | Raina, J.B. | Seymour, J.B. | Suggett, D.J. | Herdean, A. Coral endosymbiont photophysiology and stress resilience is enhanced by microbial associations. Scientific Reports 2023

Miller, S.M.| Herdean, A. | Abbriano, R.M.| Signal, B. | Gupta, V. | Ralph, P.J.| Pernice, M. FACS-mediated selection enhances growth and carotenoid production in subpopulations of Phaeodactylum tricornutum. Journal of Applied Phycology 2023

Hoch, L. | Herdean, A. | Argyle, P.A. | Ralph, P.J. High throughput phenomics for diatoms: Challenges and solutions. Progress in Oceanography 2023

2022

Herdean, A.| Hall, C.| Hughes, D.J.| Kuzhiumparambil, U.| Diocaretz, B.C.| Ralph P.J. The Temperature mapping of non-photochemical quenching in Chlorella vulgaris. Photosynthesis Research 2022. 

Dukic, E.| Gollan, P.J.| Grebe, S.| Paakkarinen, V.| Herdean, A.| Aro, E-M.| Spetea C. The Arabidopsis Thylakoid Chloride Channel ClCe Regulates ATP Availability for Light-harvesting Complex II Protein Phosphorylation. Frontiers in Plant Science 2022

McCormick, V.H.| Commault, A.| Herdean, A.| Price, S.| Pernice, M.| Ralph P.J. The Generation of Synechocystis sp. PCC 6803 mutant with enhanced laccase-like activity. Bioresource Technology Reports 2022

Herdean, A.| Sutherland, D.L.| Ralph, P.J. Phenoplate: An innovative method for assessing interacting effects of temperature and light on non-photochemical quenching in microalgae under chemical stress. New Biotechnology 2022

Johnson, M.S.| Burns, B.P.| Herdean, A.| Angeloski, A.| Ralph, P.| Morris, T.| Kindler, G.| Wong, H.L.| Kuzhiumparambil, U.| Sedger, L.M.| Larkum, A.W.D. A Cyanobacteria Enriched Layer of Shark Bay Stromatolites Reveals a New Acaryochloris Strain Living in Near Infrared Light. Microorganisms 2022

Miller, S.M.| Abbriano, R.M.| Segecova, A.| Herdean, A.| Ralph, P.J.| Pernice, M. Comparative study highlights the potential of spectral deconvolution for fucoxanthin screening in live Phaeodactylum tricornutum cultures. Marine Drugs 2022

Price, S. | Kuzhiumparambil, U.| Pernice, M. | Herdean, A.| Ralph, P.J. Enhancement of cyanobacterial PHB production using random chemical mutagenesis with detection through FACS. Bioprocess and Biosystems Engineering 2022

2021

Herdean, A.| Hall, C.C.| Pham, L.L.| Macdonald Miller, S.| Pernice, M.| Ralph, P.J. Action Spectra and Excitation Emission Matrices reveal the broad range of usable photosynthetic active radiation for Phaeodactylum tricornutum. Biochimica et Biophysica Acta - Bioenergetics 2021

Supasri, K.M.| Kumar, M.| Segečová, A.| McCauley, J.I.| Herdean, A.| Padula, M.P.| O’meara, T.| Ralph, P.J. Characterisation and bioactivity analysis of peridinin-chlorophyll a-protein (PCP) isolated from symbiodinium tridacnidorum CS-73. Journal of Marine Science and Engineering 2021 

Commault, A.S.| Kuzhiumparambil, U.| Herdean, A.| Fabris, M.| Jaramillo-Madrid, A.C.| Abbriano, R.M.| Ralph, P.J.| Pernice, M. Methyl jasmonate and methyl-β-cyclodextrin individually boost triterpenoid biosynthesis in chlamydomonas reinhardtii uvm4. Pharmaceuticals 2021

2020

Babayan, A.| Neumann, M.H.D.| Herdean, A.| Shaffer, J.M.| Janning, M.| Kobus, F.| Loges, S.| Di Pasquale, F.| Kubista, M.| Schlumpberger, M.| Lampignano, R.| Krahn, T.| Schlange, T.| Sprenger-Haussels, M.| Pantel, K.| Kloten, V. Multicenter evaluation of independent high-throughput and RT-qPCR technologies for the development of analytical workflows for circulating miRNA analysis. Cancers 2020

2019

Lampignano, R.| Neumann, M.H.D.| Weber, S.| Kloten, V.| Herdean, A.| Voss, T.| Groelz, D.| Babayan, A.| Tibbesma, M.| Schlumpberger, M.| Chemi, F.| Rothwell, D.G.| Wikman, H.| Galizzi, J.-P.| Bergheim, I.R.| Russnes, H.| Mussolin, B.| Bonin, S.| Voigt, C.| Multicenter evaluation of circulating cell-free DNA extraction and downstream analyses for the development of standardized (Pre)analytical work flows. Clinical Chemistry 2019

Kloten, V.| Neumann, M.H.D.| Pasquale, F.D.| Sprenger-Haussels, M.| Shaffer, J.M.| Schlumpberger, M.| Herdean, A.| Betsou, F.| Ammerlaan, W.| af Hällström, T.| Serkkola, E.| Forsman, T.| Lianidou, E.| Sjöback, R.| Kubista, M.| Bender, S.| Lampignano, R.| Krahn. Multicenter evaluation of circulating plasma microRNA extraction technologies for the development of clinically feasible reverse transcription quantitative PCR and next-generation sequencing analytical work flows. Clinical Chemistry 2019

Zizka, A.| Silvestro, D.| Andermann, T.| Azevedo, J.| Duarte Ritter, C.| Edler, D.| Farooq, H.| Herdean, A.| Ariza, M.| Scharn, R.| Svantesson, S.| Wengström, N.| Zizka, V.| Antonelli, A. CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases. Methods in Ecology and Evolution 2019

Herdean, A.| Dukic, E.| Cheregi, O.| Sharma, A.| Nziengui, H.| Dmitruk, D.| Solymosi, K.| Pribil, M.| Spetea, C. K+ and Cl− channels/transporters independently fine-tune photosynthesis in plants. Scientific Reports 2019

2018

Carstensen, A.| Herdean, A.| Schmidt, S.B.| Sharma, A.| Spetea, C.| Pribil, M.| Husted, S. The impacts of phosphorus deficiency on the photosynthetic electron transport chain. Plant Physiology 2018

2017

Spetea, C.| Herdean, A.| Allorent, G.| Carraretto, L.| Finazzi, G.| Szabo, I. An update on the regulation of photosynthesis by thylakoid ion channels and transporters in Arabidopsis. Physiologia Plantarum 2017

Adolfsson, L.| Nziengui, H.| Abreu, I.N.| Šimura, J.| Beebo, A.| Herdean, A.| Aboalizadeh, J.| Široká, J.| Moritz, T.| Novák, O.| Ljung, K.| Schoefs, B.| Spetea, C. Enhanced secondary- and hormone metabolism in leaves of arbuscular mycorrhizal medicago truncatula. Plant Physiology 2017

2016

Herdean, A.| Nziengui, H.| Zsiros, O.| Solymosi, K.| Garab, G.| Lundin, B.| Spetea, C. The Arabidopsis thylakoid chloride channel AtCLCe functions in chloride homeostasis and regulation of photosynthetic electron transport. Frontiers in Plant Science 2016

Schneider, A.| Steinberger, I.| Herdean, A.| Gandini, C.| Eisenhut, M.| Kurz, S.| Morper, A.| Hoecker, N.| Rühle, T.| Labs, M.| Flügge, U.-I.| Geimer, S.| Schmidt, S.B.| Husted, S.| Weber, A.P.M.| Spetea, C.| Leister, D. The evolutionarily conserved protein PHOTOSYNTHESIS AFFECTED MUTANT71 is required for efficient manganese uptake at the thylakoid membrane in Arabidopsis. Plant Cell 2016

Herdean, A.| Teardo, E.| Nilsson, A.K.| Pfeil, B.E.| Johansson, O.N.| Ünnep, R.| Nagy, G.| Zsiros, O.| Dana, S.| Solymosi, K.| Garab, G.| Szabó, I.| Spetea, C.| Lundin, B. A voltage-dependent chloride channel fine-tunes photosynthesis in plants. Nature Communications 2016

2015

Karlsson, P.M.| Herdean, A.| Adolfsson, L.| Beebo, A.| Nziengui, H.| Irigoyen, S.| Ünnep, R.| Zsiros, O.| Nagy, G.| Garab, G.| Aronsson, H.| Versaw, W.K.| Spetea, C. The Arabidopsis thylakoid transporter PHT4;1 influences phosphate availability for ATP synthesis and plant growth. Plant Journal 2015

Fristedt, R.| Herdean, A.| Blaby-Haas, E.| Mamedov, F.| Merchant, S.S.| Last, R.L.| Lundin, B. PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis. Plant Physiology 2015

Herdean, A. Ion transport in chloroplasts with role in regulation of photosynthesis. Gothenburg University 2015

2014

Flood, P.J.| Yin, L.| Herdean, A.| Harbinson, J.| Aarts, M.G.M.| Spetea, C. Natural variation in phosphorylation of photosystem II proteins in Arabidopsis thaliana: Is it caused by genetic variation in the STN kinases? Philosophical Transactions of the Royal Society B: Biological Sciences 2014

Kunz, H.-H.| Gierth, M.| Herdean, A.| Satoh-Cruz, M.| Kramer, D.M.| Spetea, C.| Schroeder, J.I. Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 2014

2012

Yin, L.| Fristedt, R.| Herdean, A.| Solymosi, K.| Bertrand, M.| Andersson, M.X.| Mamedov, F.| Vener, A.V.| Schoefs, B.| Spetea, C. Photosystem II Function and Dynamics in Three Widely Used Arabidopsis thaliana Accessions. PLoS ONE 2012

Protocols

1. Herdean, A. PSI FluorCAM protocol for Rapid Light Curve with far red pre-illumination.  https://dx.doi.org/10.17504/protocols.io.x54v9deypg3e/v1        

2. Herdean, A. PSI Open Fluor CAM script for measuring qE component of NPQ in Chlorella vulgaris. https://dx.doi.org/10.17504/protocols.io.byn9pvh6  

3. Herdean, A. Action Spectra protocol for Opentrons OT-1 liquid handling robot. https://dx.doi.org/10.17504/protocols.io.br6vm9e6     

Patents - organism

1. Herdean, A.| Ralph, P. | Sacco, A. | Heat resistant Nannochloropsis oceanica 32C; 2022 Plant Breeders Rights application submitted 2023